import "./tasks/lohhla.wdl" as lohhla | import "./tasks/lohhla.wdl" as lohhla | ||||
workflow run_lohhla { | |||||
workflow {{ project_name }} { | |||||
String sample_id | String sample_id | ||||
File normBAM | File normBAM | ||||
File normBAM_bai | File normBAM_bai | ||||
tumorBAM_bai=tumorBAM_bai, | tumorBAM_bai=tumorBAM_bai, | ||||
hlas=hlas, | hlas=hlas, | ||||
ascat=ascat, | ascat=ascat, | ||||
docker=lohhla_docker | |||||
docker=lohhla_docker, | |||||
cluster=lohhla_cluster, | cluster=lohhla_cluster, | ||||
disk_size=disk_size | disk_size=disk_size | ||||