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tasks/gatk.wdl
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| @@ -20,7 +20,7 @@ task gatk { | |||
| dbsnp="./gatk4_database/resources_broad_hg38_v0_Homo_sapiens_assembly38.dbsnp138.vcf.gz" | |||
| indel1="./gatk4_database/resources_broad_hg38_v0_Homo_sapiens_assembly38.known_indels.vcf.gz" | |||
| indel2="./gatk4_database/resources_broad_hg38_v0_Mills_and_1000G_gold_standard.indels.hg38.vcf.gz" | |||
| bed="./gatk4_database/S07604514_Padded_use.bed" | |||
| bed="./gatk4_database/aim_bed_use_sort.bed" | |||
| pon="./gatk4_database/somatic-hg38_1000g_pon.hg38.vcf.gz" | |||
| EXAC="./gatk4_database/somatic-hg38_small_exac_common_3.hg38.vcf.gz" | |||
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