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tasks/gatk.wdl
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| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| echo "gatk start!" | |||||
| cp -r ${gatk4_database} ./gatk4_database | cp -r ${gatk4_database} ./gatk4_database | ||||
| cp ${normal_bam} ./${sample_id}.bam | cp ${normal_bam} ./${sample_id}.bam | ||||
| cp ${normal_bai} ./${sample_id}.bam.bai | cp ${normal_bai} ./${sample_id}.bam.bai |
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