fusioncatcher/workflow.wdl

import "./tasks/fusioncatcher.wdl" as fusioncatcher

workflow {{project_name}} {
	String sample_id
        File sample_fastq_dir
        File fusioncatcher_database_dir

        String fusioncatcher_docker
	String	fusioncatcher_cluster
	String disk_size

	call fusioncatcher {
	input:	
	sample_id=sample_id,
	sample_fastq_dir=sample_fastq_dir,
	database_dir=fusioncatcher_database_dir,
	docker=fusioncatcher_docker,
	cluster = fusioncatcher_cluster,
	disk_size = disk_size

	}


}