fusioncatcher/workflow.wdl

import "./tasks/fusioncatcher.wdl" as fusioncatcher

workflow {{ project_name }} {
    String sample_id
    File sample_fastq_dir
    File fusioncatcher_database_dir

    String fusioncatcher_docker
    String fusioncatcher_cluster
    String disk_size

	    call fusioncatcher.fusioncatcher as fusioncatcher {
	            input:	
	            sample_id=sample_id,
	            sample_fastq_dir=sample_fastq_dir,
	            database_dir=fusioncatcher_database_dir,
	            docker=fusioncatcher_docker,
	            cluster=fusioncatcher_cluster,
	            disk_size=disk_size

	    }


}