更新 'tasks/teprof_s1.wdl'

16

tasks/teprof_s1.wdl

@@ -22,7 +22,7 @@ task teprof_s1 {
             --outSAMtype BAM SortedByCoordinate \
             --outFileNamePrefix ./${sample_id}.
 
-       samtools view -@ 8 -q 255 -h ${sample_id}.Aligned.sortedByCoord.out.bam > ${sample_id}.filtered.Aligned.sortedByCoord.out.bam
+       samtools view -@ 16 -q 255 -h ${sample_id}.Aligned.sortedByCoord.out.bam > ${sample_id}.filtered.Aligned.sortedByCoord.out.bam
        stringtie -p 8 ${sample_id}.filtered.Aligned.sortedByCoord.out.bam -o ${sample_id}.Aligned.sortedByCoord.out.gtf -m 100 -c 1 --rf
        python /database/rnapipelinerefhg38/rnapipeline/rmskhg38_annotate_gtf_update_test_tpm.py ${sample_id}.Aligned.sortedByCoord.out.gtf /database/rnapipelinerefhg38/rnapipeline/arguments.txt