fastp_starfusion_arriba_mixcr/inputs

{
    "{{ project_name }}.sample_id": "{{ sample_id }}",
    "{{ project_name }}.fastq1": "{{ fastq1 }}",
    "{{ project_name }}.fastq2": "{{ fastq2 }}",
    "{{ project_name }}.starfusion_database_dir": "{{ starfusion_database_dir }}",
    "{{ project_name }}.starfusion_docker": "{{ starfusion_docker }}",
    "{{ project_name }}.starfusion_cluster": "{{ starfusion_cluster }}",
    "{{ project_name }}.disk_size": "{{ disk_size }}",
    "{{ project_name }}.fastp_docker": "{{ fastp_docker }}",
    "{{ project_name }}.fastp_cluster": "{{ fastp_cluster }}",
    "{{ project_name }}.trim_front1": "{{ trim_front1 }}",
    "{{ project_name }}.trim_tail1": "{{ trim_tail1 }}",
    "{{ project_name }}.max_len1": "{{ max_len1 }}",
    "{{ project_name }}.trim_front2": "{{ trim_front2 }}",
    "{{ project_name }}.trim_tail2": "{{ trim_tail2 }}",
    "{{ project_name }}.max_len2": "{{ max_len2 }}",
    "{{ project_name }}.adapter_sequence": "{{ adapter_sequence }}",
    "{{ project_name }}.adapter_sequence_r2": "{{ adapter_sequence_r2 }}",
    "{{ project_name }}.disable_adapter_trimming": "{{ disable_adapter_trimming }}",
    "{{ project_name }}.length_required1": "{{ length_required1 }}",
    "{{ project_name }}.UMI": "{{ UMI }}",
    "{{ project_name }}.umi_loc": "{{ umi_loc }}",
    "{{ project_name }}.umi_len": "{{ umi_len }}",
    "{{ project_name }}.length_required": "{{ length_required }}",
    "{{ project_name }}.qualified_quality_phred": "{{ qualified_quality_phred }}",
    "{{ project_name }}.disable_quality_filtering": "{{ disable_quality_filtering }}",
    "{{ project_name }}.STAR_INDEX_DIR": "{{ STAR_INDEX_DIR }}",
    "{{ project_name }}.ASSEMBLY_FA": "{{ ASSEMBLY_FA }}",
    "{{ project_name }}.ANNOTATION_GTF": "{{ ANNOTATION_GTF }}",
    "{{ project_name }}.arriba_docker": "{{ arriba_docker }}",
    "{{ project_name }}.arriba_cluster": "{{ arriba_cluster }}",
    "{{ project_name }}.mixcr_docker": "{{ mixcr_docker }}",
    "{{ project_name }}.mixcr_cluster": "{{ mixcr_cluster }}"
}