fastp_starfusion_arriba_mixcr/defaults

{   
    "starfusion_database_dir":"oss://pgx-reference-data/reference/starfusion/ctat_genome_lib_build_dir/",
    "starfusion_docker":"registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/starfusion:1.10.0",
    "starfusion_cluster":"OnDemand bcs.b4.3xlarge img-ubuntu-vpc",
    "disk_size":"300",
    "fastp_docker":"registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
    "fastp_cluster":"OnDemand bcs.b4.3xlarge img-ubuntu-vpc",
    "trim_front1":"0",
    "trim_tail1":"0",
    "max_len1":"0",
    "trim_front2":"0",
    "trim_tail2":"0",
    "max_len2":"0",
    "adapter_sequence":"AGATCGGAAGAGCACACGTCTGAACTCCAGTCA",
    "adapter_sequence_r2":"AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT",
    "disable_adapter_trimming":"0",
    "length_required":"50",
    "length_required1":"20",
    "UMI":"0",
    "umi_len":"0",
    "umi_loc":"umi_loc",
    "qualified_quality_phred":"20",
    "disable_quality_filtering":"1",
    "STAR_INDEX_DIR":"oss://pgx-reference-data/reference/arriba_hg38_v37/STAR_index_hg38_GENCODE37/",
    "ASSEMBLY_FA":"oss://pgx-result/chenqingwang/arriba/hg38.fa",
    "ANNOTATION_GTF":"oss://pgx-result/chenqingwang/arriba/GENCODE37.gtf",
    "arriba_docker":"registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/arriba:2.1.0",
    "arriba_cluster":"OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc",
    "mixcr_docker":"registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/mixcr:3",
    "mixcr_cluster":"OnDemand bcs.b4.3xlarge img-ubuntu-vpc"
}