更新 'tasks/starfusion.wdl'

_finspector

tasks/starfusion.wdl

@@ -26,7 +26,8 @@ task starfusion{
         mv  ${sample_id}/output/star-fusion.fusion_predictions.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.tsv
         mv  ${sample_id}/output/star-fusion.fusion_predictions.abridged.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.tsv
         mv  ${sample_id}/output/star-fusion.fusion_predictions.abridged.coding_effect.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.coding_effect.tsv
-
+        mv  ${sample_id}/output/Chimeric.out.junction ${sample_id}/output/${sample_id}_Chimeric.out.junction
+       
         cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.tsv
         cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv
         cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv.annotated ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv.annotated
@@ -44,7 +45,8 @@ task starfusion{
     }
 
     output {
-        Array[File] starfusion_result=glob("${sample_id}/output/${sample_id}_*")
+        Array[File] starfusion_result=glob("${sample_id}/output/${sample_id}_star-fusion*")
+        Array[File] finspector_result=glob("${sample_id}/output/${sample_id}_finspector*")
         Array[File] starfusion_bam=glob("${sample_id}/output/*.bam")
         Array[File] starfusion_tab=glob("${sample_id}/output/*.tab")
         Array[File] starfusion_junction=glob("${sample_id}/output/*.junction")