更新 'tasks/starfusion.wdl'

${sample_id}_

tasks/starfusion.wdl

@@ -23,6 +23,14 @@ task starfusion{
             --FusionInspector validate \
             --examine_coding_effect
 
+        mv  ${sample_id}/output/star-fusion.fusion_predictions.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.tsv
+        mv  ${sample_id}/output/star-fusion.fusion_predictions.abridged.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.tsv
+        mv  ${sample_id}/output/star-fusion.fusion_predictions.abridged.coding_effect.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.coding_effect.tsv
+
+        cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.tsv
+        cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv
+        cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv.annotated ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv.annotated
+        cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv.annotated.coding_effect ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
 
         tar -zcvf ${sample_id}/output/${sample_id}_FusionInspector-validate.tgz ${sample_id}/output/FusionInspector-validate
 
@@ -36,8 +44,7 @@ task starfusion{
     }
 
     output {
-        Array[File] starfusion_result=glob("${sample_id}/output/*.tsv")
-        Array[File] FusionInspector_result=glob("${sample_id}/output/FusionInspector-validate/*.tsv")
+        Array[File] starfusion_result=glob("${sample_id}/output/${sample_id}_*")
         Array[File] starfusion_bam=glob("${sample_id}/output/*.bam")
         Array[File] starfusion_tab=glob("${sample_id}/output/*.tab")
         Array[File] starfusion_junction=glob("${sample_id}/output/*.junction")