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fastp_pathseq_64
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fastp_pathseq_64/defaults

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  1. {   

  2.     "host_image":"oss://database-shao/pathseq_database/pathseq_host.fa.img",

  3.     "host_kmer":"oss://database-shao/pathseq_database/pathseq_host.bfi",

  4.     "microbe_dict":"oss://database-shao/pathseq_database/pathseq_microbe.dict",

  5.     "microbe_bwa_image":"oss://database-shao/pathseq_database/pathseq_microbe.fa.img",

  6.     "microbe_taxonomy":"oss://database-shao/pathseq_database/pathseq_taxonomy.db",

  7.     "pathseq_docker":"registry.cn-shanghai.aliyuncs.com/shaolab_docker/gatk4:4.2.6.1",

  8.     "pathseq_cluster":"OnDemand bcs.ps.r.2xlarge img-ubuntu-vpc",

  9.     "disk_size":"300",

  10.     "fastp_docker":"registry.cn-shanghai.aliyuncs.com/shaolab_docker/teprof:1.5",

  11.     "fastp_cluster":"OnDemand bcs.ps.r.2xlarge img-ubuntu-vpc",

  12.     "trim_front1":"0",

  13.     "trim_tail1":"0",

  14.     "max_len1":"0",

  15.     "trim_front2":"0",

  16.     "trim_tail2":"0",

  17.     "max_len2":"0",

  18.     "adapter_sequence":"AGATCGGAAGAGCACACGTCTGAACTCCAGTCA",

  19.     "adapter_sequence_r2":"AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT",

  20.     "disable_adapter_trimming":"0",

  21.     "length_required":"50",

  22.     "length_required1":"20",

  23.     "UMI":"0",

  24.     "umi_len":"0",

  25.     "umi_loc":"umi_loc",

  26.     "qualified_quality_phred":"20",

  27.     "disable_quality_filtering":"1"

  28. }