更新 'tasks/battenberg.wdl'

tasks/battenberg.wdl

@@ -18,14 +18,6 @@ task battenberg {
         samtools view -h -@ 16 -o ${normal_id}.sorted.deduped.sam ./${normal_id}.bam
         samtools view -h -@ 16 -o ${sample_id}.sorted.deduped.sam ./${sample_id}.bam
 
-        #sed -i 's/chr//g' ${normal_id}.sorted.deduped.sam
-        #sed -i 's/chr//g' ${sample_id}.sorted.deduped.sam
-
-        samtools sort -@ 16 -o ${normal_id}.sorted.deduped.nochr.bam ${normal_id}.sorted.deduped.sam
-        samtools sort -@ 16 -o ${sample_id}.sorted.deduped.nochr.bam ${sample_id}.sorted.deduped.sam
-   
-
-
     >>>
 
     runtime {