battenberg_only/workflow.wdl

import "./tasks/battenberg.wdl" as battenberg
workflow {{ project_name }} {
    String sample_id
    File tumor_bam
    File tumor_bam_bai
    String normal_id
    File normal_bam
    File normal_bam_bai

    String battenberg_docker
    String battenberg_cluster
    String disk_size

        call battenberg.battenberg as battenberg {
                input:	
                sample_id=sample_id,
                tumor_bam=tumor_bam,
                tumor_bam_bai=tumor_bam_bai,
                normal_id=normal_id,
                normal_bam=normal_bam,
                normal_bam_bai=normal_bam_bai,
                docker=battenberg_docker,
                cluster=battenberg_cluster,
                disk_size=disk_size
        }


}