更新 'tasks/battenberg.wdl'

/opt/conda/envs/batternberg/bin/Rscript

tasks/battenberg.wdl

@@ -21,7 +21,7 @@ task battenberg {
         cp ${tumor_bam_bai} ./${sample_id}.bam.bai
       
         cp /opt/battenberg_reference/battenberg_wgs.R ./
-        Rscript ./battenberg_wgs.R -t ${sample_id} -n ${normal_id} --nb ./${normal_id}.bam --tb  ./${sample_id}.bam --cpu 4 --sex female -o ./
+        /opt/conda/envs/batternberg/bin/Rscript /battenberg_wgs.R -t ${sample_id} -n ${normal_id} --nb ./${normal_id}.bam --tb  ./${sample_id}.bam --cpu 4 --sex female -o ./
         mkdir ${sample_id}_chr_png
         cp ${sample_id}_subclones_chr*.png ./${sample_id}_chr_png/
         tar zcvf ./${sample_id}_chr_png.tgz ./${sample_id}_chr_png/