first commit

defaults

@@ -1,5 +1,5 @@
 {   
-    "battenberg_docker":"registry.cn-shanghai.aliyuncs.com/shaolab2023_docker/battenberg_lcl:3.1",
+    "battenberg_docker":"registry.cn-shanghai.aliyuncs.com/shaolab2023_docker/trec:7.0",
     "battenberg_cluster":"OnDemand bcs.es.r.6xlarge img-ubuntu-vpc",
     "disk_size":"200"
 }

tasks/battenberg.wdl

@@ -10,7 +10,7 @@ task battenberg {
         set -o pipefail
         set -e
         
-        cp /opt/battenberg_reference/a.R ./
+        cp /software/TREC_script.Rscript  ./
 
     >>>
 
@@ -22,7 +22,7 @@ task battenberg {
     }
 
     output {
-        File subclones = "a.R"
+        File subclones = "TREC_script.Rscript"
     }
 
 }