更新 'tasks/battenberg.wdl'

${sample_id}.R

tasks/battenberg.wdl

@@ -10,24 +10,21 @@ task battenberg {
         set -o pipefail
         set -e
         
-        cp /opt/battenberg_reference/a.R ./
-        Rscript a.R
-        echo ${sample_id}
-        echo ${sample_id} > ${sample_id}_test.txt
-        cp data.csv ${sample_id}.csv
+        cp /opt/battenberg_reference/battenberg_wgs.R ./${sample_id}.R
+
 
     >>>
 
     runtime {
         docker : docker
         cluster: cluster
-        systemDisk: "cloud_ssd 40"
+        systemDisk: "cloud_ssd 100"
         dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
     }
 
     output {
-        File subclones = "${sample_id}.csv"
-        File s_test = "${sample_id}_test.txt"
+        File subclones = "${sample_id}.R"
+
     }
 
 }