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tasks/battenberg.wdl
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| @@ -17,7 +17,7 @@ task battenberg { | |||
| samtools index ./${normal_id}.sorted.deduped.nochr.bam | |||
| samtools index ./${tumor_id}.sorted.deduped.nochr.bam | |||
| cp /opt/battenberg_reference/battenberg_wgs.R ./ | |||
| Rscript ./battenberg_wgs.R -t ${tumor_id} -n ${normal_id} --nb ${normal_id}.sorted.deduped.nochr.bam --tb ${tumor_id}.sorted.deduped.nochr.bam --cpu 1 --sex female -o ./ | |||
| Rscript ./battenberg_wgs.R -t ${tumor_id} -n ${normal_id} --nb ${normal_id}.sorted.deduped.nochr.bam --tb ${tumor_id}.sorted.deduped.nochr.bam --cpu 10 --sex female -o ./ | |||
| >>> | |||
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