更新 'tasks/battenberg.wdl'

tasks/battenberg.wdl

@@ -17,7 +17,7 @@ task battenberg {
         samtools index  ./${normal_id}.sorted.deduped.nochr.bam
         samtools index  ./${sample_id}.sorted.deduped.nochr.bam
         cp /opt/battenberg_reference/battenberg_wgs.R ./
-        Rscript ./battenberg_wgs.R -t ${sample_id} -n ${normal_id} --nb ${normal_id}.sorted.deduped.nochr.bam --tb  ${sample_id}.sorted.deduped.nochr.bam --cpu 10 --sex female -o ./
+        Rscript ./battenberg_wgs.R -t ${sample_id} -n ${normal_id} --nb ${normal_id}.sorted.deduped.nochr.bam --tb  ${sample_id}.sorted.deduped.nochr.bam --cpu 4 --sex female -o ./
         mkdir ${sample_id}_chr_png
         cp ${sample_id}_subclones_chr*.png ./${sample_id}_chr_png/
         tar zcvf ./${sample_id}_chr_png.tgz ./${sample_id}_chr_png/