mkdir ./output/ | mkdir ./output/ | ||||
STAR \ | STAR \ | ||||
--runThreadN 4 \ | |||||
--runThreadN 16 \ | |||||
--genomeDir ${STAR_INDEX_DIR} \ | --genomeDir ${STAR_INDEX_DIR} \ | ||||
--genomeLoad NoSharedMemory \ | --genomeLoad NoSharedMemory \ | ||||
--readFilesIn ${fastq1} ${fastq2} \ | --readFilesIn ${fastq1} ${fastq2} \ |