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TNBC_trim_starfusion_arriba
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TNBC_trim_starfusion_arriba/defaults

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  1. {   

  2.     "starfusion_database_dir":"oss://database-breastsurg/starfusion/ctat_genome_lib_build_dir/",

  3.     "starfusion_docker":"registry.cn-shanghai.aliyuncs.com/breastsurg_docker/starfusion:1.10.0",

  4.     "starfusion_cluster":"OnDemand bcs.es.r.8xlarge img-ubuntu-vpc",

  5.     "disk_size":"300",

  6.     "trim_galore_docker":"registry.cn-shanghai.aliyuncs.com/breastsurg_docker/trim_galore:0.6.7",

  7.     "trim_galore_cluster":"OnDemand bcs.es.r.4xlarge img-ubuntu-vpc",

  8.     "STAR_INDEX_DIR":"oss://database-breastsurg/arriba_hg38_v37/STAR_index_hg38_GENCODE37/",

  9.     "ASSEMBLY_FA":"oss://database-breastsurg/arriba/hg38.fa",

  10.     "ANNOTATION_GTF":"oss://database-breastsurg/arriba/GENCODE37.gtf",

  11.     "arriba_docker":"registry.cn-shanghai.aliyuncs.com/breastsurg_docker/arriba:2.1.0",

  12.     "arriba_cluster":"OnDemand bcs.es.r.8xlarge img-ubuntu-vpc"

  13. }