task vcf2maf { String sample File multianno_txt String maf_name = basename(multianno_txt,".hg38_multianno.txt") String docker String cluster_config String disk_size command <<< vcf2maf ${multianno_txt} ${maf_name}.maf >>> runtime { docker: docker cluster: cluster_config systemDisk: "cloud_ssd 40" dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" } output { File maf = "${maf_name}.maf" } }