{
    "fasta": "hg19_nochr.fa",
    "ref_dir": "oss://pgx-reference-data/hg19/",
    "dbsnp": "dbsnp_138.hg19_nochr_sorted.vcf",
    "dbsnp_dir": "oss://pgx-reference-data/hg19/",
    "SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
    "SENTIEON_LICENSE": "192.168.0.55:8990",
    "dbmills_dir": "oss://pgx-reference-data/hg19/",
    "db_mills": "Mills_and_1000G_gold_standard.indels.hg19_nochr.vcf",
    "sentieon_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2017.11.04",
    "annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
    "vcf2maf_r_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/r-base:4.0.2",
    "bcftools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
    "database": "oss://pgx-reference-data/annovar/",
    "regions": "oss://pgx-reference-data/reference/wes_bedfiles/agilent_v6/agilent_v6.bed",
    "BCF" : ["oss://share-data-temp/TNBC/vcf/FUSCCTNBC083_pon.vcf","oss://share-data-temp/TNBC/vcf/FUSCCTNBC330_pon.vcf","oss://share-data-temp/TNBC/vcf/FUSCCTNBC467_pon.vcf"],
    "PONmode": true,
    "cosmic_vcf": "CosmicCodingMuts.hg19.v91.vcf",
    "cosmic_dir": "oss://pgx-reference-data/reference/cosmic/",
    "disk_size": "200",
    "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
    "set_annovar": true,
    "set_vcf2maf": true
}