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README.md

Strelka2

You don’t need to tune the parameters of strelka. It bases on trained models, you may train new models to improve performance.

Two steps:

  1. Generate the configuration
   
  1. Run Strelka
   
Per sample run time

4h30min

Reference
  1. Strelka User Guide https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md
  2. Strelka paper https://www.nature.com/articles/s41592-018-0051-x