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修改corealigner

master
huangyechao 1 year ago
parent
commit
8a06e7f4e7
1 changed files with 1 additions and 1 deletions
  1. +1
    -1
      tasks/corealigner.wdl

+ 1
- 1
tasks/corealigner.wdl View File

@@ -24,7 +24,7 @@ task corealigner {
set -e
export SENTIEON_LICENSE=192.168.0.55:8990
nt=$(nproc)
${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} -t $nt -i ${tumor_recaled_bam} -i ${normal_recaled_bam} --algo Realigner -k ${db_mills} -k ${dbsnp} ${sample}_corealigned.bam
${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} -t $nt -i ${tumor_recaled_bam} -i ${normal_recaled_bam} --algo Realigner -k ${dbmills_dir}/${db_mills} -k ${dbsnp_dir}/${dbsnp} ${sample}_corealigned.bam
>>>
runtime {

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