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修改README

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huangyechao 1 year ago
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      README.md

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@@ -68,7 +68,7 @@ choppy install huangyechao/wgs-germline
--fastq_1 测序数据的R1端
--fastq_2 测序数据的R2端
-K 10000000 该设置可用于比对过程中使得结果与线程数独立
-o 比对结果输出的文件名
-o 比对结果输出的文件名
```

**Dedup**
@@ -96,16 +96,16 @@ IS_METRIC_PDF the location and filename of the insertion size metrics report ou
**BQSR**

```bash
RECAL_DATA.TABLE the location and filename of the recalibration table
RECAL_DATA.TABLE.POST the location and filename of the temporary post recalibration table
RECAL_RESULT.CSV the location and filename of the temporary recalibration results output file used for plotting
RECAL_DATA.TABLE the location and filename of the recalibration table
RECAL_DATA.TABLE.POST the location and filename of the temporary post recalibration table
RECAL_RESULT.CSV the location and filename of the temporary recalibration results output file used for plotting
BQSR_PDF the location and filename of the BSQR results output file
```

**Haplotyper**

```bash
VARIANT_VCF the location and filename of the variant calling output file
VARIANT_VCF the location and filename of the variant calling output file
```

### APP输入

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