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Variant calling using Varscan somatic, processSomatic and somaticFilter based on BAM file.

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Calculate the bed coverage of multiple BAM files before and after dedup

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bcftools-merge is used to merge VCF files into a singe VCF.

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bamdst is a lightweight tool to stat the depth coverage of target regions of bam file(s).

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DNA-seq pipeline with Sentieon + Varscan.

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