You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
chenqingwang d700f83731 更新 'README.md' 1 week ago
.vscode add Count 2 months ago
tasks alter count 2 months ago
.DS_Store first commit 4 months ago
README.md 更新 'README.md' 1 week ago
defaults Update 'defaults' 1 month ago
inputs add Count 2 months ago
workflow.wdl alter input 2 months ago

README.md

README.md

Author: Qingwang Chen

Email: qwch20@fudan.edu.cn

Last Updates: 16/10/2020

Requirements

  • choppy
  • Ali-Cloud
  • Linux
# 激活choppy环境
$ source activate choppy (open-choppy-env)

# 第一次安装
$ choppy install chenqingwang/bam-readcount
# 非第一次安装
$ choppy install chenqingwang/bam-readcount -f 

# 查询已安装APP
$ choppy apps

Quick Start

# 准备 samples.csv 文件
$ choppy samples chenqingwang/bam-readcount-latest > samples.csv

# 提交任务
$ choppy batch chenqingwang/bam-readcount-latest samples.csv -p Your_project_name -l Your_label

# 查询任务运行状况
$ choppy query -L Your_label | grep "status"

# 查询失败任务
$ choppy search -s Failed -p Test_bamreadcount_chenqingwang_20201016 -u chenqingwang --short-format

# 结果文件地址
$ oss://choppy-cromwell-result/test-choppy/Your_project_name/